Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs117166082 chr10:69765990 T/C 0 177 25.87 18.2 2.28 KM Plot
PCPG rs117168496 chr10:69587597 T/C 0 171 25.87 16.97 2.28 KM Plot
PCPG rs11718484 chr3:195835404 G/A 2.32E-11 173 24.53 32.72 6.87 KM Plot
PCPG rs117189362 chr10:69791652 G/A 0 177 25.87 18.2 2.28 KM Plot
PCPG rs11719113 chr3:80555211 T/C 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs117229851 chr10:29827355 C/G 7.42E-11 173 25.6 22.05 10.3 KM Plot
PCPG rs117250878 chr10:69808220 G/A 0 177 25.87 18.2 2.28 KM Plot
PCPG rs117252974 chr10:29828999 T/G 7.42E-11 173 25.6 22.05 10.3 KM Plot
PCPG rs117285117 chr16:89910250 T/G 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs117303447 chr10:69763482 G/A 0 177 25.87 18.2 2.28 KM Plot
PCPG rs117305040 chr12:56657888 A/G 1.09E-7 177 25.17 27.33 0.8 KM Plot
PCPG rs117311764 chr10:69764605 G/A 0 177 25.87 18.2 2.28 KM Plot
PCPG rs117372673 chr10:69709769 C/T 0 176 25.87 18.2 2.28 KM Plot
PCPG rs11738619 chr5:13829140 T/G 6.3E-5 176 27.33 19.87 19.28 KM Plot
PCPG rs11739841 chr5:171529949 A/G 0.000114 177 25.87 22.3 17.12 KM Plot